PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00000g00252.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TCP
Protein Properties Length: 416aa    MW: 45483.2 Da    PI: 6.5949
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00000g00252.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.64.5e-3423146389
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssss 69 
                               g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++                  +   
  Peaxi162Scf00000g00252.1  23 GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELEELppwkptigpientnfdqeK--- 104
                               89*************************************************************9888877655443222220... PP

                       TCP  70 aseceaesssssasnsssg..........................k 89 
                                   ++++++ s++++  +                          +
  Peaxi162Scf00000g00252.1 105 ----KQQEENFSTQQNDVNvslvdsiagpsskremimlgnesahsS 146
                               ....222222333323233455555555433333333322222220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-3023181IPR005333Transcription factor, TCP
PROSITE profilePS5136934.2952482IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGLKNSGGEI VEVQGGHIVR SIGRKDRHSK VCTAKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKAAID ELEELPPWKP TIGPIENTNF DQEKKQQEEN FSTQQNDVNV  120
SLVDSIAGPS SKREMIMLGN ESAHSSGNNA NARFMPQSLD SDTIADTIKS FFPMGGSSEG  180
SSSAAMQFHN FQESNLLSRS NSQSQDLRLS LQSLQDPILL HHQNQQAQHH NHSADHTEEQ  240
VQTHFQASNF FHGTPLGFDA SGWSEHQQQP VELGRMQRLA ATRAGGDTGI ALGGGAVTGG  300
GGYLFNSQPA PPLIQQFFTQ NQFFSQRGPL QSSYSPSIRA WIDPSAIAIA TADPIYHHQH  360
HQAVLPMYSA SIPGIGFASE LGGFSGFRIP ARIQGDIEEH DGISDKPSSA SSDSRH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2095841e-107AC209584.1 Solanum lycopersicum DNA sequence from clone LE_HBa-21L2 on chromosome 12, complete sequence.
GenBankEF0915741e-107EF091574.1 Solanum lycopersicum SlTCP3 mRNA, complete cds.
GenBankGQ4963211e-107GQ496321.1 Solanum lycopersicum TCP transcription factor 3 (TCP3) mRNA, complete cds.
GenBankHG9754511e-107HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755241e-107HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785152.10.0PREDICTED: transcription factor TCP4
RefseqXP_016472433.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_009630328.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_009630327.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_016463777.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_016463776.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR51e-103TCP4_ARATH; Transcription factor TCP4
TrEMBLM4PM760.0M4PM76_9SOLA; TCP trancription factor
STRINGPGSC0003DMT4000397860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.39e-76TCP family protein